Repositories list

• rdmkit

  Public
  ELIXIR Research Data Management Toolkit - Find the answers to your research data management questions here.

  researchtoolkitdata-management+ 1rdm

  TeX

  •

  Other

  •145•104•33•9•Updated Dec 7, 2025Dec 7, 2025

• MARS

  Public
  Multi-Repository Data Submission using ISA-JSON

  Java

  •

  MIT License

  •9•10•25•3•Updated Dec 6, 2025Dec 6, 2025

• plant-faidare

  Public
  FAIDARE (FAIR Data-finder for Agronomic REsearch) is a plant scientific data portal. This is a mirror of the main repository (https://forgemia.inra.fr/urgi-is/faidare) that embed the continuous integration environment. Issues should preferably be created in Gitlab. It relies on https://github.com/elixir-europe/plant-brapi-etl-faidare for harvest…

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •0•4•0•23•Updated Dec 4, 2025Dec 4, 2025

• interoperability_2024-26

  Public
  Results from Interoperability Platform 2024-2026

  HTML

  •2•1•10•0•Updated Dec 3, 2025Dec 3, 2025

• ds-handbook

  Public
  SCSS

  •

  Other

  •9•2•20•1•Updated Dec 3, 2025Dec 3, 2025

• rdm-maturity-model

  Public
  RDM Maturity model for assessment

  HTML

  •

  MIT License

  •1•0•7•0•Updated Dec 3, 2025Dec 3, 2025

• faircookbook-rdmkit

  Public
  This repository will in the first place be used to link pages between FAIR Cookbook and RDMkit.

  Python

  •

  MIT License

  •4•6•4•0•Updated Dec 1, 2025Dec 1, 2025

• mars-cli

  Public
  Python

  •

  MIT License

  •2•0•13•1•Updated Nov 25, 2025Nov 25, 2025

• beacon-ui

  Public
  Beacon UI

  JavaScript

  •

  Apache License 2.0

  •6•0•1•0•Updated Nov 24, 2025Nov 24, 2025

• java-beacon-v2.api

  Public
  Beacon v2 java model

  Java

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Nov 19, 2025Nov 19, 2025

• software-management-plans

  Public
  For the Tools Platform.

  SCSS

  •0•0•0•0•Updated Nov 11, 2025Nov 11, 2025

• biohackathon-projects-2025

  Public
  Project descriptions for BioHackathon Europe 2025

  biohackeu25

  Python

  •23•17•0•0•Updated Nov 7, 2025Nov 7, 2025

• java-ga4gh-vrs-model

  Public
  GA4GH Variation Representation Specification Java Model

  Java

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Nov 3, 2025Nov 3, 2025

• biohackathon-europe

  Public
  BioHackathon Europe

  HTML

  •1•0•0•0•Updated Nov 3, 2025Nov 3, 2025

• plant-brapi-etl-faidare

  Public
  Now maintained at https://forge.inrae.fr/urgi/is/plant-brapi-etl-faidare. Harvest and index meta data from BrAPI endpoints for data access through the plant-faidare data lookup portal (https://github.com/elixir-europe/plant-faidare).

  etlbrapielixir-plant+ 1breeding-api

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •8•7•11•9•Updated Oct 17, 2025Oct 17, 2025

• beacon-network-docker

  Public
  Beacon Network v2 docker installation

  Shell

  •2•1•0•0•Updated Sep 30, 2025Sep 30, 2025

• beacon-network-backend

  Public
  Java Beacon Network server

  Java

  •

  GNU Lesser General Public License v2.1

  •1•1•5•0•Updated Sep 26, 2025Sep 26, 2025

• sco-community

  Public
  A public repository to host the Single Cell Omics community webpage: https://www.singlecellomics.org

  Shell

  •

  MIT License

  •6•2•34•0•Updated Sep 23, 2025Sep 23, 2025

• mars-repository-lib

  Public
  Java

  •1•0•0•0•Updated Sep 18, 2025Sep 18, 2025

• neat-beacon-v2-validator

  Public
  Simple java-based Beacon v2 validator

  Java

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Aug 21, 2025Aug 21, 2025

• compute_wp5

  Public
  Compute Platform 2024-2026 Work Package 5

  MIT License

  •1•2•18•1•Updated Jul 23, 2025Jul 23, 2025

• infectious-diseases-toolkit

  Public
  Infectious diseases toolkit

  Python

  •

  Other

  •45•15•9•2•Updated May 26, 2025May 26, 2025

• biovalidator

  Public
  JSON validator derived from AJV supporting ontology and taxonomy validation.

  JavaScript

  •

  Apache License 2.0

  •6•21•20•3•Updated May 22, 2025May 22, 2025

• fed-a-crate

  Public
  Project website for Fed-A-Crate

  SCSS

  •

  MIT License

  •2•1•2•0•Updated Apr 30, 2025Apr 30, 2025

• beacon-network-ui

  Public
  JavaScript

  •

  Apache License 2.0

  •1•1•10•0•Updated Mar 28, 2025Mar 28, 2025

• biohackathon-europe-2024

  Public archive
  For the BioHackathon Europe 2024 website.

  HTML

  •3•4•0•0•Updated Feb 28, 2025Feb 28, 2025

• dsw-tips-and-tricks

  Public
  Tips and tricks on Data Stewardship Wizard (DSW) for data stewards.

  Jinja

  •

  MIT License

  •0•2•3•0•Updated Dec 10, 2024Dec 10, 2024

• beacon-network

  Public
  ELIXIR Beacon Network Repository

  HTML

  •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• by-covid-website

  Public
  The code for the BY-COVID project website.

  reactreactjsreact-bootstrap+ 2gatsbybootstrap5

  MDX

  •

  BSD Zero Clause License

  •4•2•1•0•Updated Nov 12, 2024Nov 12, 2024

• biohackathon-projects-2024

  Public
  Project code for BioHackathon Europe 2024.

  biohackeu24

  16•27•0•0•Updated Nov 11, 2024Nov 11, 2024